Finally a WAR with no conflict. We have to give a big electronic high five to the group from the University of Copenhagen who just introduced a very helpful web utility: WAR-Webserver for aligning structural RNAs is a very handy site that allows you to use the best algorithms for aligning and predicting the consensus secondary structure for a set of non-coding RNA sequences. A nice aspect of WAR is that you don’t have to download a bunch of different algorithms to your local PC to run the programs.
Check out the WAR Website at: http://genome.ku.dk/resources/war/ and see for yourself. Tell them we sent you!