Features

Features

EpiGenie Features call out new Methods, provide Insights into emerging trends, or sometimes just share technical tips from the experts in our community.

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An Oliver’s Twist on an Old Tale: Orphan CpGs Will Have You Asking for More

July 17, 2021

Move over Oliver Twist, there’s a new orphan in town to satisfy our hunger for stories of DNA methylation. Two new tales of orphan CpGs help them find a home in our hearts and epigenomes through the application of cutting-edge epigenomics techniques and genetic engineering to embryonic stem cells and neuronal cells. Making the Right Connections: […]

It’s Nature versus Nurture in an Epigenetic Rejuvenation Face-off!

July 15, 2021

The age-old battle of nature versus nurture has entered new frontiers with two exciting studies exploring different mechanisms that drive “epigenetic rejuvenation” – also known as the science of how our old and creaky DNA methylation-based epigenetic clocks can be wound back into a frolicking and fancy-free state. Together, these studies demonstrate the two faces […]

New Single-cell CRISPR Screens “ATAC” Chromatin Accessibility

June 6, 2021

Have you been struggling to agree on a plan of action for your recent epigenetic experiments? Have you been fighting over just what strategy to use to decipher how genetic alterations affect the epigenetic landscape? While we should all follow John and Yoko’s example and try to give peace a chance, you sometimes need to […]

Methylation’s Moonlighting Mysteries: DNMT3L’s Divergent Roles in Down Syndrome

April 12, 2021

By daylight, DNA methyltransferase 3L (DNMT3L) takes on the modest role of a catalytically inactive but stimulatory binding partner for its more popular methyltransferase siblings (DNMT3A and DNMT3B). But, when the sun goes down, DNMT3L gives new meaning to protein moonlighting. DNMT3L is located on chromosome 21, which has made it a prime candidate for the Down syndrome […]

From Single Molecules to Single Cells: NanoMethPhase and scMspJI-seq Upgrade DNA Methylation Mining Methods

April 2, 2021

Mining the DNA methylome can provide a treasure trove of biological insight, and two new whole-genome DNA methylation sequencing methods have come along to fuel a technological gold rush. NanoMethPhase and scMspJI-seq break new ground in phasing allele-specific methylation (ASM) and generating strand-specific single-cell methylomes. By applying these novel approaches, the talented teams dig deep into complex DNA […]

Cancer-associated Histone Mutations Modulate Nucleosome Remodeling to Get That Histone Body Moving!

March 26, 2021

While any new study mentioning histones generally gets our epigenetic tails wagging, a stunning study into how cancer-associated histone mutations influence nucleosome remodeling has also got our “globular” bodies moving! Although most researchers focus on mutations in the histone tail, most high-frequency cancer-associated mutations actually affect the main “bodies” of the histone proteins (known as […]

The Epigenetic Clock – From Deep Space to Deep Learning

December 30, 2020

As the year comes to its end, our epigenetic clocks keep on ticking, and hot new DNA methylation-based studies keep rolling in. Here, we gaze into two deeply interesting studies that take us on an epigenetic journey from deep space to deep learning by reporting how space travel can influence epigenetic aging and how neural […]

C.elegans Studies Worm into the Fundamentals of Transgenerational Epigenetic Inheritance

September 21, 2020

While a “bird’s-eye view” of a topic can often provide colossal insight, the opposite perspective can sometimes be just as useful! Recently, two fascinating studies of transgenerational epigenetic inheritance have taken a “worm’s-eye view” of this research area to deepen our understanding of this complex mechanism in the model nematode worm C. elegans. C. elegans […]

Micro-C and Single-Cell Hi-C Provide Macro Chromosome Conformation Insights

April 11, 2020

Genome-wide chromosome conformation capture analyses, such as Hi-C, have provided us with snapshots of the large-scale spatial architecture of mammalian genomes, describing chromatin compartments, topologically associating domains (TADs), and CTCF– and cohesin-mediated chromatin loops in many cell types. However, the resolution of Hi-C-based protocols, limited by the size and uniformity of chromatin fragmentation, represents a […]

EpiGenie Guide: Chromatin Shearing

March 6, 2020

ChIP-Seq has transformed the field of epigenetics, providing unprecedented resolution and coverage for surveying protein- DNA interactions. Powerful, high-throughput sequencing is credited with most of the benefits, but there’s a lot more that goes into ChIP-Seq than sequencing. Chromatin shearing is one of the first critical steps in the ChIP-Seq workflow. Depending on your approach, […]