New Single-cell CRISPR Screens “ATAC” Chromatin AccessibilityJune 6, 2021Have you been struggling to agree on a plan of action for your recent epigenetic experiments? Have you been fighting over just what strategy to use to decipher how genetic alterations affect the epigenetic landscape? While we should all follow John and Yoko’s example and try to give peace a chance, you sometimes need to […]
Where’s the Cancer Driver? MethSig Cuts Through the Background Noise to Identify Oncogenic Promoter HypermethylationMay 26, 2021As any TikTokker, Zoom presenter, or amateur photographer worth their salt can tell you, sometimes a good background is all you need to make your content really pop. It turns out that the same principle applies when trying to figure out which promoter DNA hypermethylation events drive tumor growth. MethSig, a new algorithm developed by Heng Pan in Dan Landau’s group at Weill Cornell Medicine, improves […]
Nu.Q Capture‑MS: The New New of Liquid Biopsy Detects Histone Modifications on Circulating NucleosomesApril 20, 2021With the rapid pace of liquid biopsy assay development, it can be a challenge to keep up with the latest and greatest early cancer detection methods. Although most methods are focused on assaying the association of cell-free DNA methylation profiles with cancer, a new method homes in on circulating nucleosomes and their histone post-translational modifications (PTMs). In order […]
Removing R-loops Regulates Repression: Revealing the Role of LSD1April 19, 2021Epigenetic regulatory cascades can be complex affairs…to say the least. Thankfully, a recent chromatin effector coregulator-based study now keeps us firmly in the loop by revealing how a histone demethylase induces gene repression by triggering a regulatory cascade that removes RNA:DNA hybrid structures known as R-loops! A talented team led by Philipp Rathert (University of […]
From Single Molecules to Single Cells: NanoMethPhase and scMspJI-seq Upgrade DNA Methylation Mining MethodsApril 2, 2021Mining the DNA methylome can provide a treasure trove of biological insight, and two new whole-genome DNA methylation sequencing methods have come along to fuel a technological gold rush. NanoMethPhase and scMspJI-seq break new ground in phasing allele-specific methylation (ASM) and generating strand-specific single-cell methylomes. By applying these novel approaches, the talented teams dig deep into complex DNA […]
Are My Eggs Getting Old? Single-cell Multiomics Shows that Oocytes Have an Epigenetic TimestampJanuary 13, 2021Unfortunately, real life is not a fairy tale. Unlike Sleeping Beauty, sleeping oocytes are not frozen in time. As oocytes get older, they acquire epigenetic changes that make it harder for them to get on with their baby making business. Important new single-cell multiomics work from Gavin Kelsey’s and Myriam Hemberger’s teams at the Babraham Institute shows […]
SAXS Imaging Gets to the (Brave)heart of the Matter: First Full-Length Structure of a Long Non-Coding RNAFebruary 18, 2020It’s Valentine’s season, which means love is in the air, and heart-shaped novelties are abundant. But new research from the labs of Trushar Patel (University of Lethbridge, Alberta, Canada) and Karissa Sanbonmatsu (Los Alamos National Laboratory, New Mexico, USA) has flipped the script: they are giving us the shape of Braveheart, a long non-coding RNA […]
A Dynamic Epigenetic Editing Duo: Mutant DNMT3A and SunTag Team Up to Reduce Off-Target MethylationFebruary 4, 2020Some of the best superheroes are born out of a mutational event. It’s how Peter Parker became Spiderman, how Bruce Banner turned into the Incredible Hulk, and where the X-Men derive their powers. It just goes to show that mutations aren’t always a bad thing — a point exemplified by the new superhero team in […]
A Perfect Harmony: Orchestrating Joint Chromatin Conformation and Methylome Mapping in Single CellsOctober 7, 2019If a better understanding of gene regulation is music to your ears, then tune in for the latest developments in single-cell epigenomics. It is well established that both DNA methylation and higher-order chromatin structure play crucial roles in development, differentiation and disease, and there are readily available technologies for both (whole-genome bisulfite sequencing and chromatin […]
The Tn5 Transposase Takes Single-cell ChIP-Seq to the Next LevelSeptember 18, 2019It’s never good to see someone lagging behind the rest, but while stepwise developments to single-cell chromatin immunoprecipitation and subsequent parallel sequencing techniques (ChIP-seq) have led to gradually improved yields and increased sensitivity with reduced numbers of cells since the first report of a single-cell ChIP protocol, we still lack widely-applicable and low-cost methods to […]
