YY1 Drives Enhancers and Promoters Loopy!January 15, 2018Cell culture hood in disarray? Favorite coffee cup missing? Internet running slow? What exactly drives you loopy in the laboratory?! Recently, the lab of Richard A. Young (Whitehead Institute for Biomedical Research, Cambridge, USA) has been driven round the bend in their quest to understand what controls the DNA looping process that brings together enhancers […]
An endosiRNA Trap Shoots Down the Transposable Element Rebellion of Embryonic DevelopmentNovember 12, 2017During early embryonic development, our genome lets down its DNA methylation defenses and becomes vulnerable to rebellious transposable elements (TEs). However, those rebel scum are quickly met with a barrage of endogenous short interfering RNAs (endosiRNAs), all before they realize even realize that “It’s A Trap!” The mechanism of this cunning tactic employed by our […]
UBE3A Networks with Other Imprinted Genes to Shape Neurodevelopment and AutismOctober 24, 2017Networking shapes our brains in many ways; whether it be in a professional, social, or genomically imprinted fashion. Linking us into the latter, new findings from the lab of Janine LaSalle at the University of California, Davis, uncover a hub in an imprinted gene network critical to neurodevelopment. The imprinted 15q11-q13 locus is involved in […]
The Hi’s and Lo’s of Cohesin’s Crafty Chromatin ConcertoOctober 18, 2017While solos are the key to some of your favorite tunes, a masterpiece as magnificent as chromatin conformation is hardly the work of a one-man band; instead, it takes an orchestra of histone modifications to complement and counterpoint cohesin´s sonorific solos. Now, a duet from the labs of Francois Spitz (Pasteur Institute, France) and Leonid […]
xQTLs Provide Xtra Epigenetic Treasure for GWAS ProspectorsSeptember 25, 2017On any good pirate map, ‘X’ marks the spot for buried treasure. It turns out the same is true in epigenetics: xQTL analysis marks the spot for buried GWAS associations. Genome-wide association studies (GWAS) have been instrumental in identifying single nucleotide polymorphisms (SNPs) associated with human disease. However, finding the biological relevance of such SNPs […]
LINE-1 Retrotransposons Keep Early Embryonic Chromatin in LineSeptember 10, 2017While cocktails and embryonic development usually don’t mix well, a cocktail of three transcription-activator-like effectors (TALEs) has just shaken up our understanding of the role LINE-1 retrotransposons during early embryonic development. LINE-1 activation had been considered a consequence of developmental processes, but now a talented team from the lab of Maria-Elena Torres-Padilla at the German […]
Targeted and Reversible Chromatin Conformations Crafted by CLOuD9August 27, 2017Imagine a world where you could create chromatin loops where and when you want. You’d feel like you’re on cloud nine. Well, get your head out of the clouds, because you’ve got to thank the lab of Kevin Wang at Stanford for targeted and reversible chromatin loop reorganization using deactivated Cas9 (CLOuD9). The CLOuD9 system […]
dCas9 Epigenome Editing Toolbox Smashes Histone Methylation DogmaAugust 14, 2017Tools are great for building, but sometimes it’s more fun using them to break things down. While we’ve applied deactivated Cas9 (dCas9) tools to build our knowledge of DNA methylation, this time it takes an entire toolbox to break the connection between histone methylation and gene repression. This constructive deconstruction comes at you from the […]
The Great Unknown of Chromatin Conformation DynamicsAugust 7, 2017Apart from the ever rising and falling measurements of one’s waistline and bank balance, the three-dimensional (3D) chromatin conformation of the mammalian genome is one of the most dynamic and least understood factors in a scientist’s life. Luckily, the development of new high-definition techniques and enhanced computational analyses are helping us to understand how the […]
Genomic Imprinting’s Alternative Choices: H3K27me3 and 5hmCJuly 31, 2017In today’s world, where choices are a plenty, alternative is a fashionable choice. When it comes to genomic imprinting, traditionalists swear by DNA cytosine methylation (5mC); however, sometimes imprinting turns to alternative epigenetic marks. Genomic imprinting is typically driven by 5mC at imprinting control regions (ICRs), where it represses the expression of the marked allele […]
