Comparative Epigenomics Branches OutOctober 19, 2010When you’re comparing epigenomes, it’s easy to miss the forest for the trees. Because the epigenetic “fruit” on each nucleotide can vary with factors like cell type, differentiation state, and the environment, it’s often tricky to spot patterns on the epigenome-wide scale. In a recent Nature Biotechnology commentary, Aleksandar Milosavlijevic of the NIH Epigenomics Roadmap […]
Grabbing Histones By The TailSeptember 15, 2010For those old-school scientists who are still using erector sets and Lincoln logs to model the interactions between histone tails and proteins, we’ve found a new interactive tool that’ll bring your histone analysis into the 21st century. A team from the Structural Genomics Consortium (a collaboration between the University of Oxford and the University of […]
Silencing of Ultraconserved ncRNAs Is Not So Golden in CancerAugust 31, 2010If you live near a construction site, are listening to one half of a cell-phone conversation in a movie theater, or stuck on an airliner next to a fussy infant, then for you silence may indeed be golden. But, for certain ultraconserved non-coding RNAs, transcriptional silencing can lead to a cellular uproar. A new article […]
DNA Methylation States Mix and Mingle on the Nuclear Dance FloorAugust 31, 2010Remember those lame junior high dances, where most of us stood silently and uncomfortably against the gym wall, watching our wilder classmates rock out to Bon Jovi on the dance floor? Some researchers think that methylated and unmethylated promoters in tumors segregate themselves in the same way: silenced genes gather in heterochromatin at the nuclear […]
The Epigenetics of Mental IllnessAugust 31, 2010Mental disorders like depression will likely affect 1/6 of Americans at some point in their life. That probability might be higher if you’re a Cleveland sports fan, but seriously, with mental illnesses affecting hundreds of millions of people globally each year, we’re glad to see an increasing focus on the epigenetics of these disorders. In […]
Protein Methylation: The Other Epigenetic RegulatorAugust 13, 2010While epigenetic mechanisms like DNA methylation and chromatin remodeling get most of the attention, more is being learned everyday about other important mechanisms that are just now starting to get their share of the limelight. In this article contributed by John Aletta at CH3 Biosystems, he explains how protein arginine methylation is also a key […]
FFPE: Friend or Foe to Chromatin Analysis?August 4, 2010It Seems like a no-brainer that chopping up proteins and denaturing DNA would have a dramatic effect on chromatin structure. Since so many cancer diagnoses, developmental studies, and examinations of chromatin structure in general rely on slices of wax-embedded tissue blocks, you’d think someone would take a comprehensive look at the effects of prepping those […]
EpiGenie 2010 Mid-Year Editor’s Favorites: ChromatinJuly 21, 2010We’re halfway through 2010, so we’ve decided to take a look back at some of the best epigenetics publications we’ve covered so far this year. Here are some of our favorite Chromatin headlines. Histone Mods and Alternative Splicing This publication might have popped up in the mainest of mainstream journals, but the focus is all […]
Genes Weigh Their Alternative Promoter OptionsJuly 8, 2010It’s always nice to have options, but nowadays there are often so many choices that you can drive yourself crazy making a decision, just ask LeBron James. A recent Nature paper shows that even genes need a little input from DNA methylation when they consider using alternative gene promoters. Joseph Costello at UCSF and colleagues […]
EZH2: Cancer Villain or MDS Hero?July 7, 2010EZH2 takes a lot of abuse, and is often labeled as a dreaded oncogene , but like a movie villain who redeems themselves in the end, the histone methyltransferase isn’t all evil. According to two new papers published simultaneously in Nature Genetics, EZH2 may in fact function as a tumor suppressor in some blood cancers. […]