CLIPped Mouse Testes Reveal Novel Class of Small RNAsJuly 16, 2009Fish with germ cell-specific bait, and you get a new class of RNA. U Penn researchers CLIPped (Cross-Linked and ImmunoPrecipitated) mouse testis extract with the anti-DNA/RNA-binding protein MSY2, and caught a whole bunch of novel ~30 nt RNAs. While about 7% of these were known piRNAs, most came from a distinct class of testicular RNAs […]
NIH Digs into the Diet Movement with New Epigenetics Research GrantsJuly 16, 2009Nowadays it seems like everybody’s on some kind of a diet. Until recently, even public funding for epigenetic research had been leaner than a movie star on the South Beach diet. But with last year’s funding of the Roadmap Initiative and yesterday’s release of grant applications for the study of diet and epigenetics, things are […]
miBridge: Bringing mRNA UTRs TogetherJuly 9, 2009When it comes to the the miRNA translational repression model, 5’ UTRs have been neglected more than California’s budget deficit in recent years. Despite computational approaches predicting oodles of miRNA docking sites for miRNAs in the 5’ UTR, we haven’t seen that many studies tackle the other side of miRNA repression. But just a few […]
Want Smooth Muscle? You’ll Need Some miR-145July 8, 2009OK, maybe you won’t find a bottle of miR-145 at the juice bar of your local gym anytime soon, but a paper published recently in Nature says that miR-145 is all you really need to turn mouse cardiac progenitor cells into smooth muscle. What’s more, both miR-145 and miR-143 team up to regulate a smooth […]
HIV’s RISC-y BehaviorJuly 1, 2009There’s nothing restricting miRNAs to targeting just endogenous mRNAs. So it’s no surprise to find that expression of miR-29a – which targets the 3’UTR of HIV-1 mRNA — increases during HIV infection. Researchers from U Mass Med School in Worchester, and the Burnham Institute for Medical Research in La Jolla, found that HIV mRNA hangs […]
Erring on the Side of Calling: Sequencing Mismatches Highlight RNA EditingJuly 1, 2009To err is enzymatic; to identify errors previously thought to be technical, but are actually biologically relevant, is divine. Most researchers view the sequencing errors from reverse transcription, sequencing reaction, or base calling part of the job. After all, with the mountains of sequence pouring off these platforms, one would expect and accept a few […]
Don’t Go Away Mad (Just GOmir)July 1, 2009Figuring out the targets of your favorite miRNA is no simple matter, and if it ranks somewhere between cleaning the bathroom and a trip to the dentist on your list, then you’ll want to check out a new java-based tool called GOmir which makes the miRNA target analysis experience a little less painful. A group […]
Lincd In: Large Intervening Non-Coding RNAs Expand their NetworksJune 25, 2009Last February, a team of standouts from the publication factory in Boston (aka Broad Institute), published work highlighting over 1,500 previously un-annotated genomic sequences that housed large intervening non-coding RNAs known as lincRNAs. These transcripts showed similar expression patterns as mRNA and they exhibited more conservation than neutral sequences, indicating they were probably functional, but […]
tasiRNAs Get the Word OutJune 24, 2009Spreading gossip around the water cooler is OK, but some news just has to be shouted from the mountaintops. These days, that means it’ll be posted to our blog, Twitter feed, and Facebook status box. Researchers at the Cold Spring Harbor Laboratory, Institut des Sciences du Végétal, and Institut de Biologie Moléculaire des Plantes report […]
Zeroing in on miRNA Targets with HITS-CLIPJune 24, 2009With only a modest, 6-8 nucleotide seed region required for pairing, miRNAs theoretically aren’t too fussy when it comes to which mRNAs they pair up with. But don’t let this apparent “beer goggle” regulation fool you. When it comes down to miRNA binding in vivo, miRNAs might be a little more discriminating than previously suggested. […]