Special Multiomics Feature: Combinatorial DNA Methylation and Chromatin Assays Serve Up New InsightNovember 9, 2020Combinations of old favorites can be even tastier than the sum of their parts. Who doesn’t leave peanut butter and jam, chips and dip, and DNA methylation and chromatin assays? While they sound appetizing, those last two aren’t quite as easy to get together. Many assays have been developed in the past to combine ChIP […]
Long-Sperm Effects: THC and Nicotine Have A Lasting Impact on Bivalent Chromatin and Autism GenesNovember 4, 2020While some fathers planning a family may be left in a bivalent state when deciding about smoking cannabis or nicotine, new research has cleared the air. THC and nicotine both prime an autism spectrum disorder profile in sperm through altering DNA methylation within bivalent chromatin states. In their seminal paper, researchers from the lab of […]
Low-Pass WGBS of Newborn Dried Blood Spots: A Methylome-Wide Role for the RUNX1 Super-Enhancer in Down SyndromeOctober 23, 2020While collecting blood spots may seem like a hobby best left for a TV serial killer like Dexter Morgan, a novel low-pass whole-genome bisulfite sequencing (WGBS) approach has shown that newborn dried blood spots are more than just a trophy. Their entire methylome can be assayed to answer enticing epigenomic enigmas. DNA methylation array studies have […]
X Marks the Spot for Neurodevelopment in the Autism Spectrum Disorder Cord Blood MethylomeOctober 19, 2020Every good pirate knows that X marks the spot on their treasure map, but what’s one to do when it’s surrounded by the dangers of uncharted territory? Thankfully, when it comes to the unexplored regions of the Autism Spectrum Disorder (ASD) DNA methylome, whole genome bisulfite sequencing (WGBS) has illuminated the way to the X chromosome […]
Epigenetic Cross-Talk: Histone H3K36 Methyltransferases Shape Sex Differences in Germ Cell DNA MethylationOctober 7, 2020Why did the DNA methylation cross the road? To cross-talk to the histone methyltransferase on the other side! In the epigenetics, cross-talk is how different marks “talk” to each other during development and is still something of mystery. NSD1 and SETD2 encode enzymes that chemically modify H3K36me2 and H3K36me3 respectively. Germline mutations in these genes […]
Racing Against the Epigenetic Clock: PRDM8 and Premature AgingOctober 5, 2020Scientists are always working against the clock, and recently, a team led by Wolfgang Wagner (RWTH Aachen University, Germany) used their ever-evaporating time to explore a potential link between telomere shortening and epigenetic clock acceleration in premature-aging associated bone marrow failure syndromes and describe a new disease biomarker! Patients with premature aging and difficult-to-diagnose bone […]
The One With All The Brand New Methylation FactorsSeptember 22, 2020Could there BE anymore genes affecting DNA methylation? Actually, yes! We always hear about the main cast of the methylation show, the DNMTs and the TETs, but where are all the supporting actors that attract, repel or otherwise interact with these stars? A new show (study) from the studio (lab) of Bastiaan Heijmans (Leiden University […]
A TET1 Thermostat Cranks up the Heat in Beige AdipocytesSeptember 9, 2020Many of us eagerly reach for the thermostat to crank up the heat a little as summer turns to fall, and now, a team of red-hot researchers studying heat generation in adipose tissue have discovered that the ten-eleven translocation 1 (TET1) DNA demethylase forms part of an epigenetic thermostat that could provide a means to […]
TET2 Overtrims the Methylation Hedges at Enhancers in Parkinson’s Disease NeuronsAugust 25, 2020It takes real restraint to prevent a routine hedge trim from turning into a horticultural horror show; and like an overzealous landscaper, new research shows that TET2 may be mowing down the methylome in Parkinson’s Disease (PD) neurons. The cognitive and motor symptoms of PD are caused by the degeneration of dopamine-producing neurons in the […]
Epitranscriptomic tRNA Study Finally Reveals the “Y” of Aggressive Colon TumorsAugust 25, 2020Away with you Holmes, begone Poirot, and bye-bye Nancy Drew, because a terrific team of epigenetic detectives has solved an epitranscriptomic cold case to reveal the “Y” of aggressive colon tumors by linking CpG island promoter DNA hypermethylation of a key epitranscriptomic modifier and a transfer RNA (tRNA) modification to tumorigenesis. Epitranscriptomics includes the modification […]
