3.7M CpGs Await with Improved Methyl-Seq Target EnrichmentMarch 3, 2012March 3, 2012 Instead of sequencing (and paying for, managing, storing, and analyzing) everything, target enrichment blazes through samples like a combine, harvesting for regions of interest. Even as sequencing costs drop towards that “$1,000 genome” level, enriching for select targets makes a lot of sense, especially if you only want to look at a […]
Epigenetics at the Intersection of Environment and SelectionFebruary 28, 2012One of the most fascinating things about epigenetics is the implication it has for inheritance and evolution. Theories and hypotheses are everywhere, of course, but until Sir Richard Branson launches a Virgin Time Travel business, actually measuring the changes from thousands of years of natural selection will remain a pretty tall order. Two recent papers […]
The New Human Epigenome Browser from WashUFebruary 23, 2012Looking for the latest in epigenome data analysis tools? Then you’ll want to check out Washington University’s latest creation; The Human Epigenome Browser. Built as part of the Roadmap Epigenomics Project to house and view Human Epigenome Atlas data, this new platform comes with all sorts of slick features to make analyzing, comparing and integrating […]
Emerging Details On Monoallelic Silencing in TumorsFebruary 19, 2012It’s funny how research can pay off in surprising ways. In this case, University of Wisconsin scientists were studying the tumor suppressor gene APC when they realized there was an unusual brand of monoallelic silencing going on. Earlier studies have found that many early adenomas begin with the loss of function of the Adenomatous polyposis […]
Epigenetics and TwinsFebruary 8, 2012Every summer outside Cleveland, Ohio identical twins congregate at the Twins Days Festival. Twins from all over join in on an assortment of activities over three days that resembles a massive Doublemint® gum commercial. It’s not just the twins that get stoked for the festival though. As was highlighted in a nice article in National […]
Big DNA Methylation Changes in Little TikesFebruary 7, 2012Kids grow and change so fast. One day, they’re learning to walk. The next day, they’re Twittering and texting while driving your car. In the first study to analyze age-related DNA methylation (DNAm) changes in pediatric blood samples, an all-star cast of researchers out of Emory University now report that DNAm changes more rapidly during […]
Assisted Reproduction Treatments May Cause Imprinting ProblemsJanuary 26, 2012These days, there is more than one way to make a baby. Unfortunately though, the newer ways still don’t have things down to a science yet. Assisted reproduction treatments (or technology, known as ART) are clinical procedures designed to help patients with fertility issues get pregnant. But reports have documented a rise in cases of […]
5-hmC Stability a Mixed Bag in Neural Development and AgingJanuary 25, 2012Just like tweets about the U.S. Presidential race, updates on the function of 5-hydroxymethylcytosine (5-hmC) keep pouring in. For a while, no one really knew what the mod did, but new reports find that while some 5-hmC marks are stable, and others are dynamic, both may be critical for neural development right after birth and […]
DNA Methylation: 2011 Editor’s FavoritesJanuary 11, 2012DNA methylation research had a little something for everyone in 2011. Not only was it linked to cancer, diet, post-traumatic stress, socio-economic status and heritability; but more was learned about 5-hydroxymethylcytosine as well. As if that wasn’t enough, two new cytosine variants, 5-formylcytosine and 5-carboxylcytsosine, joined the party this year too. We can’t wait to […]
Technology & Methods: 2011 Editor’s FavoritesJanuary 11, 2012Without advanced technology, epigenetic research would flounder. (You’d also probably be reading this on a stone tablet, which are really tricky to post on the web.) Check out our favorite improvements in technologies and methods from 2011 that are making sure epigenetic research is staying on the cutting edge. Single Cell Methylation Profiling The Restriction […]