5fC & 5caC Follow Up Strong in 5hmC SequelDecember 14, 2011Life was simpler back when there were only four bases. Nowadays researchers studying DNA methylation have to keep track of four methylCytosine derivatives alone, and the research is just starting to heat up. The last couple of years the TET family of proteins has proven effective at catalyzing 5-methylcytosine (5mC) into 5-hydroxymethylcytosine (5hmC), apparently as […]
Databases for EpigeneticistsDecember 13, 2011The holidays have come a little early for epigeneticists! Nucleic Acids Research just published papers on several databases that put a wealth of information on various epi-phenomena right at your fingertips. Chances are, at least one of these has info that will make your research life a whole lot easier. HIstome The Histone Infobase (HIstome), […]
Profiling Exon Methylation with Liquid Hybridization Capture-Based Bisulfite SequencingDecember 12, 2011Sometimes, you just want to get to the good stuff right away. Now, researchers in China report that they’ve developed a way to target their sequencing when analyzing methylomes rather juggling 6 hard drives. With their new liquid hybridization capture-based bisulfite sequencing (LHC-BS) method, they just grab exons and analyze them for methylation. The method […]
EpiGenie Review: Non-coding RNAs and miRNAs in CancerDecember 9, 2011Based on the latest research, the cancer::non-coding RNA conncection is undeniable. It’s just all the specifics around things like miRNA regulation that are still left to be understood. While dedicated epigenetics investigators are hard at work solving those mechanistic riddles, we’ve decided to take a look back at what’s been learned so far. Here are […]
Hypermethylated Pockets within Hypomethylated Genomic Regions Defines Cancer CellsDecember 5, 2011What makes a cell become a cancerous? We’d all love to know that, right? Well, new research has gotten a little bit closer to figuring out key epigenetic differences between cancer and normal genomes. It turns out that the DNA methylation patterns of these cells differ drastically, no surprise there, but it’s the genomic context […]
Get Captivating Performance with Zymo’s Genome-wide 5-hmC Analysis ServiceNovember 29, 2011The interest in 5-hydroxymethylcytosine (5-hmC) seems to be increasing faster than the national debt, but there still aren’t many tools available to aid scientists in understanding the 6th base, especially in a genome-wide context. Most current antibody and IP-based approaches are useful but can be a little difficult when applied to NGS. Fortunately, the methylation […]
EpiGenie Review: DNA Methylation in CancerNovember 28, 2011DNA Methylation definitely has a major role in cancer, but with the all of the different tissue types and cancer variations, it’s been nearly impossible to define exactly what that role is. That hasn’t stopped dedicated researchers from chipping away at the task, though…or EpiGenie from covering it. Check out the advances in understanding DNAm […]
Socio-Economic Status Leaves A Methyl Mark on DNANovember 9, 2011Candidates for public office never seem to learn that you can’t escape your past. It’s almost like they’ve never even heard of Google or YouTube or something! Speaking of not letting go of the past, we’ve seen a few papers recently suggesting that some epigenetic changes in early life can stick around for decades. Now, […]
Epigenetic Marker Maternal Blood Prenatal Trisomy 21November 8, 2011Screening for trisomy 21, or Down Syndrome, is a terrifying experience for soon-to-be parents that’s made even worse by the anxiety of the invasive procedures used in today’s testing methods. Soon, though, new diagnostics based on epigenetic markers should be able to indicate prenatal trisomy 21 from just a bit of mom’s blood. A new […]
DNA Methylation Changes in CancerOctober 29, 2011EpiGenie ran recently ran a review of the new text Epigenetics: A Reference Manual. Now, to present a little taste of what the book has to offer, here’s a summary of one of the chapters. DNA Methylation Changes in Cancer By Samson Mani and Zdenko Herceg Epigenetic mechanisms can contribute to each step of cancer […]