EpiGenie 5-hmC Round-upJune 1, 2011We’re not entirely sure what the enigmatic base variant 5-hydroxymethylcytosine (5-hmC) does or why it’s important yet, but we do know it’s become one of our favorite epigenetic topics. Whether you’re a 5-hmC newbie, or just need a quick refresher, you’ll want to check out our favorite articles we’ve featured on the subject. Hydroxymethylcytosine Shakes […]
Histone Tails Take the Lead In De Novo MethylationMay 29, 2011“Newborn” (or de novo) DNA sequences come into this world just like newborn human babies—naked. So, how do new sequences get their DNA methylation on? Researchers from the Chinese Academy of Sciences say they’ve figured out what happens after the histones settle in: H3 tails that lack methylation at K4 bind to and activate de […]
Methylome Analysis Today: No One is PerfectMay 18, 2011With everyone focused on their own daily grind, its easy to gloss over some of life’s more philosophical questions like: “Does a falling tree make a sound if no one is there to hear it?” “What is the sound of one hand clapping?” or even “Are my methylome studies really accurate?” In an Epigenomics review […]
Decoding the Epigenetic Role of Non-coding RNAsMay 18, 2011About 90% of our genome is transcribed, but only 1-2% of the transcripts encode proteins. So what are all of those non-coding RNAs (ncRNAs) doing? A better question might be: what aren’t they doing? In addition to regulating gene expression at the transcriptional and post-transcriptional levels, ncRNAs play a big part in the control of […]
5hmC Analysis TwoferMay 13, 2011Everybody loves a twofer, and now for the amount of time spent reading a single Nature paper ( or at least this EpiGenie summary), you can learn about two new methods for 5hmC analysis. A clever team of researchers has developed two independent approaches for the genome-wide mapping of 5hmC, neither of which relies on […]
Race and Sex Major Players in Global DNA MethylationMay 3, 2011Lower global DNA methylation levels have been associated with genomic instability and cancer in humans, making it a great potential biomarker in peripheral blood. So scientists took a close look at the factors around global methylation levels and found that race and gender play a huge role. Researchers from Texas and New York measured the […]
Probing Placental EpigeneticsMay 3, 2011Ever since Tom Cruise publicly vowed to eat his newborn’s placenta a few years back, the “afterbirth” organ has gotten a bum rap. But recent evidence suggests that in addition to its long-recognized role in supplying oxygen and nutrients to the growing fetus, the placenta also influences fetal development through epigenetic mechanisms. Now a trio […]
Epigenetic SNPs Behind Not So Positive Feedback Loop in AlcoholismMay 2, 2011We all like to celebrate here and there. Shoot…EpiGenie’s still recovering from its royal wedding breakfast bash. But most experts will tell you that moderation is key. Now, researchers in Sweden and Australia give us even more reason to heed that advice and avoid going on that next weekend bender—they found that heavy drinking can […]
Tumor Suppressor Methylation is Cause for Cancer ConcernMay 2, 2011Aberrant DNA methylation causes cancer. Wait, didn’t we know this already? Well, not exactly. Association and causation are two very different things. For instance, being smart may be associated with wearing glasses, but the actual cause is a desire to not bump into everything. In order to determine whether aberrant DNA methylation at particular loci […]
Sperm Nucleosome Retention is All Off BaseApril 19, 2011There are lots of ways sperm cells are different from other cell types, but a new PLoS Genetics paper focused on one way in particular, chromatin structure, in order to find out what those differences mean and where they come from.In most cells, DNA is packaged up into nucleosomes, but in sperm, nucleosomes are only […]