Probing Placental EpigeneticsMay 3, 2011Ever since Tom Cruise publicly vowed to eat his newborn’s placenta a few years back, the “afterbirth” organ has gotten a bum rap. But recent evidence suggests that in addition to its long-recognized role in supplying oxygen and nutrients to the growing fetus, the placenta also influences fetal development through epigenetic mechanisms. Now a trio […]
DNA Methylation qPCR RemixedApril 5, 2011qPCR is used daily to validate array and sequencing results, but qPCR approaches have yet to dominate DNA methylation analysis the same way they have with other applications like gene expression analysis or genotyping. Things are a little bit more complicated when it comes to the epigenetic mods, but that hasn’t stopped hungry researchers from […]
Making The ChIP Antibody GradesMarch 29, 2011Back in the 2000’s most researchers spent their post-ChIP analysis looking at a gel or a PCR curve. Now, they spend their analysis time combing through hard drives of sequencing data. A lot has changed in the world of location analysis, but the need for good antibodies remains the same; which is probably why we […]
Epigenetics in Evolution with Dr Eva JablonkaMarch 13, 2011Dr. Eva Jablonka discusses the role of epigenetics in evolutionary biology. This short take was shot during a break at Keystone Symposia’s meeting on Environmental Epigenomics and Disease Susceptibility held in March 2011 in Asheville, North Carolina. Epigenetics in Evolution Well, what I’m doing really is theoretical work, and I’m mainly interested in the evolutionary […]
5-Azacytidine: The Charlie Sheen of DNA Methylation Inhibitors?March 13, 2011As we’ve all recently witnessed, some actors have polished public images but are a mess in real life. After reading two recent papers by groups in Los Angeles and Turkey, it sounds like the same could be said of 5-azacytidine (Vidaza®). Mounds of clinical data now show that 5-azacytidine is a good treatment for blood […]
Genome-Wide Methylation Sequencing Hits the Fast LaneFebruary 11, 2011Genome-wide DNA methylation sequencing hasn’t been much more than sci-fi reading for most labs. Sure there’ve been some great papers with really slick technologies, but many researchers just don’t have access to them. In many cases, no single lab can handle the complete experimental workflow from sample prep to data management/analysis, requiring collaborations with other […]
Single Cell Methylation Analysis: Brought to You by RMSAJanuary 30, 2011As DNA methylation keeps popping up in the discussion of more and more diseases, it’s clear that current analysis techniques can only give us part of the big picture. To help focus on other parts of that picture, a new method has been devised that zooms in on the methylation status of single cells. The […]
Top Epigenetics Technology Features on EpiGenieJanuary 14, 2011Want to catch up on some of the latest methods, new technologies, and expert technical tricks? You’re in the right place. Here’s a list of our favorite emerging Technology and Methods articles from the last year or so to really jump-start your 2011. Check ‘em out! DNA Methylation Analysis Methylome Analysis Snapshot February 11, 2010. […]
SILAC Offers a New Twist on Histone TurnoverDecember 15, 2010A new technique has arrived on the scene that makes life a little easier for those of you into studying histone turnover rates. Taking advantage of technologies used by our friends in proteomics, researchers at Princeton University explored the turnover of various histone proteins and how post-translational modifications (PTMs) alter the speed of that process. […]
Enriching 5-hmC Detection with SugarDecember 15, 2010In today’s more health conscious world, we’ve seen a surge in organic-everything. Enriching anything with sugar is a definite no-no. Good thing researchers play by their own rules. A University of Chicago research team led by Chuan He recently enriched the latest entrant to DNA methylation marks, 5-hmC, by enriching with glucose in a really […]