Getting SMRT with Direct DNA Methylation DetectionMay 10, 2010Discovering a new use for something is always a nice suprise, sort of like finding a forgotten $20 bill in your back pocket. Researchers at Pacific Biosciences realized that their single-molecule, real-time (SMRT) sequencing technique could also have the bonus ability to directly detect DNA methylation (DNAm)—without bisulfite conversion or any other additional sample prep. […]
Forgetting Things? Better Acetylate Your H4K12May 6, 2010Ever feel like you’re forgetting things more often as you get older? Little things like where you put your keys or why you walked into the cold room (not that we would know what that’s like – as far as you know!) can turn into huge mysteries. Researchers now think they’ve pin-pointed why this happens, […]
CpG-SNPs & Allele-Specific Methylation Lead to Fuzzy MethylationMay 6, 2010Interpreting DNA methylation data is tough enough when you get binary, yes/no results, but can be downright maddening when your CpG sites are giving you mixed signals. Researchers at UCSD have found that it’s been allele-specific methylation (ASM) and CpG-SNPs causing much of that “fuzzy methylation”. The scientists tackled the thorny issue of CpGs with […]
microRNA Targeting mRNAs: More Exceptions Than RulesMay 5, 2010Up to now, all miRNAs have been assumed to work the same way when it comes to finding their mRNA targets, but a new paper shows that miRNAs behave more like rugged individualists in how they function. Researchers from the University of Kentucky broke out the RIP-Chip method (Argonaute, aka AGO, co-IP assays coupled with […]
BPA Seeps Into Placental miRNA ExpressionMay 4, 2010Since 2008, Bisphenol A (BPA) has seen more bad press than a big U.S. bank. The media blitz of studies linking BPA to a number of reproductive, immune and CNS disorders has led people to eye suspiciously everything from baby bottles to that cool REI water bottle you’ve been hiking with the last few years. […]
Tracing the Roots of Mesenchymal Stem Cells Yields DNA Methylation InsightsApril 28, 2010Most of us are at least somewhat curious about our lineage: are we descended from a king, an outlaw, or maybe just a particularly snazzy dresser? And do our distant cousins in faraway lands share certain characteristics (such as a penchant for polyester) with us? A group of researchers in Norway asked similar questions about […]
RDM1 Corners the RNA Directed DNA Methylation PuzzleApril 28, 2010It’s often easiest to put together a jigsaw puzzle by finding the corner pieces first, then working on the borders before moving on to what’s happening in the center. A similar approach to solving the transcriptional gene silencing (TGS) and RNA-directed DNA methylation (RdDM) mechanisms in Arabidopsis has identified a protein, RDM1, which seems to […]
RNA Binding Proteins Get miRNA Regulation Turned OnApril 14, 2010With all of the big energy conservation campaigns over the years, not many people understand flipping-switches like Southern Californians. You can’t get through a Lakers game without being reminded to turn the lights off, or adjust your thermostat. It appears that some researchers from the Institute of Microbiology in Prague have gotten into the act […]
Self Renewal: Yoga, Meditation and DNA MethyltransferasesApril 8, 2010Despite all the technology “progress” over the years that was supposed to save us heaps of time, we seem to be busier than ever. Real-time internet and PDAs make communication a 24-7 gig, so it’s no wonder that there’s a big movement in self-renewal. We would take some time here to give you small ways […]
Transcription Enhancers Have an Oprah MomentMarch 30, 2010Not to get all “Oprah”, but sometimes, you need to let go of unstable elements in order to enhance your life. Researchers now report that this drama unfolds at the DNA level too. Here’s what they found: an unstable nucleosome sitting smack dab in the center of an enhancer can get kicked off to make […]