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ChIPmentation: The Next Fast and Low-Input ChIP-seq Sensation

August 25, 2015

ChIP-Seq is the bread and butter of histone and transcription factor research. It has seen countless modifications to allow it to perform under all the variables biology can throw at it, but with that specialization has come limitations to generalization. Now the methodological maestros in the lab of Christoph Bock, which brought us single-cell methylome sequencing, […]

Two Cocktails to Boost Reprogramming to Neurons

August 17, 2015

Trendy drinks come and go, but it looks like there are a couple of new cocktails that will have some staying power within the stem cell community. In last week’s issue of Cell Stem Cell, two independent groups report in back-to-back papers the development of small molecule chemical cocktails, which enable neurons to be directly derived […]

New Insights into Puzzling Placental DNA Methylation Domains

August 14, 2015

The human placental methylome was the first normal tissue where partially methylated domains (PMDs) were characterized, found to be developmentally dynamic, and distinct from highly methylated domains (HMDs, methylation >70%). PMDs are a large scale genomic feature with DNA methylation levels that are less than 70% but nowhere near 0% and tend to harbour neuron […]

Phage Therapy: Synthetic Biology Goes Viral

August 12, 2015

Viruses have long been maligned as worthless, pseudo-alive parasites, but treatment for antibiotic-resistant infections may be about to go viral. No, we don’t mean cats taking medicine on video (although…). No, this is phage therapy. Phages are viruses that infect bacteria, and research into using them to treat bacterial infections goes back decades, especially in […]

Epigenetics Drives Genetics Straight Into Evolution

August 9, 2015

In today’s fast-paced world, quickly adapting to your environment is a game-changer. But genetic determinism cannot fully explain the rapid adaption seen in many species, which has left evolution in a dark age. That is until the enlightening work of Michael Skinner’s laboratory at Washington State University. Their observations on transgenerational epigenetic inheritance have been […]

Hacking the Microbiome: Bacteria Advance Therapeutics and Diagnostics

August 5, 2015

Commensal bacteria have long had branding issues. First there was an awareness problem – “Wait, these things are inside us?” Then there was an image problem – “Germs! Bad! Kill!” They even had a Pluto moment, when it turned out a whole bunch of them weren’t even bacteria at all. Despite these difficulties, the word […]

Lights Out! Sleep Loss Affects DNA Methylation of Circadian Genes

August 4, 2015

‘La nuit blanche’. No, it is not a delicious pastry. It’s the French expression for staying up all night and not going to bed until the next evening, which in most cases will leave you pretty irritable. But losing one night’s sleep may affect more than just your mood; a new study by Swedish […]

Wanted: Serially-Offending Epigenetic Enzymes Implicated In Cancer

August 4, 2015

Epigenetic enzymes are among the prime suspects in the identity parade of genes responsible for the deregulation of the genome in cancer. But are the same epigenetic enzymes always found at the scene of the crime? A new analysis from a team of international researchers led by Andrew Teschendorff identifies three epigenetic enzymes that can […]

DNA Methylation Helps T Cells with their Career Path

August 3, 2015

In one of the lower valleys of Waddington’s epigenetic landscape, T cells are confronted with a fatal decision: Become a CD4+ helper T cell and assist your brethren in fighting evil invaders or turn into a CD8+ cytotoxic T cell and do the dirty work. But as in all good fantasy novels, our heroes first […]

Webinar: Multiplex Profiling of Epigenetic Modifications – Measuring Assay Specific & Off-target Effects in the Same Sample

July 29, 2015

Abstract: A variety of epigenetic modifications including post-translational modifications (PTMs) on histone tails regulate gene expression and have profound effects on cell signaling and human disease. N-terminal histone tails can have a variety of modifications, such as phosphorylation, methylation and acetylation at specific amino acid residues which are conserved throughout eukaryotes and function by altering chromatin […]