miR-23a,27a,24-2 Cluster is Bad to the BoneNovember 19, 2010We’re not calling the miRNA 23a,27a,24-2 cluster a bunch of biological bad-guys, but if you’re a progenitor cell hoping to one day become an osteoblast, then they aren’t exactly your best friends. A new study reveals that the miRNA 23a,27a,24-2 cluster is at the center of a regulatory network that controls osteoblast differentiation. The new […]
Epimutation: The New Risk Factor on the BRCA1 BlockNovember 18, 2010BRCA1, (breast cancer susceptibility gene 1), is involved in repairing damaged DNA or destroying cells when the DNA is beyond repair. Women with mutations in the BRCA1 gene have a predisposition to developing breast and ovarian cancer. OK, that wasn’t necessarily a newsflash, but wait… EpiGenie reader, Alexander Dobrovic and his team at the Peter […]
Stem Cells Heartbroken Without miR-499November 8, 2010How can you mend a broken heart? Well if researchers at Stanford University are right, then one day all you’ll need are some stem cells and miR-499 to cure a bad case of heartache (well, at least the kind that follows a heart attack. The bad breakup kind will still be up to relationship experts […]
Prions Take Epigenetics to the ExtremeOctober 28, 2010Yeah, we know that somewhere between the X-games and base-jumping light beer ads, the term “Extreme” got a little played out. But, in their Perspective piece in Science, Randal Halfmann and Susan Lindquist make the case that certain proteins with unique folding properties, called prions, deserve the “extreme” label. Prions are proteins that are stably […]
Pardon the Epigenetic DisruptionOctober 28, 2010One of the great things about stem cells is how they seem to do just about anything. These days, stem cells have more Apps than an iPad, and in the new issue of Science we find one more: using stem cells to screen for “epigenetic disruptors”. The proposed idea is to use the built-in developmental […]
Take a Look: NCBI Epigenomics Sample BrowserOctober 26, 2010Our friends at the NCBI clued us in to one of their newest free tools that should prove to be a big help to anyone wanting to sort through next-gen sequencing data from epigenomic studies. NCBI’s new Sample Browser, located on its Epigenomics page, lets users search, access and analyze sequencing data from various publicly […]
Chromatin Remodelers In Search of Mr. RightOctober 26, 2010For the first time, the molecular machines known as “chromatin remodelers” have been found to spend much of their time rapidly searching for their nucleosome soulmates. And, just like desperate singles at a Speed Dating party, they keep at it until they find the right one. Chromatin remodelers help organize the genome, control DNA accessibility, […]
The miRNA Trade Deficit in CancerOctober 25, 2010Balancing imports and exports can be a tough task for any entity. It turns out cancer cells have a major issues when it comes to exporting pre-miRNA between the nucleus and cytoplasm that can have a pretty nasty impact on cellular homeostasis. miRNA expression profiles in tumors typically show a down regulation of miRNA expression. […]
Comparative Epigenomics Branches OutOctober 19, 2010When you’re comparing epigenomes, it’s easy to miss the forest for the trees. Because the epigenetic “fruit” on each nucleotide can vary with factors like cell type, differentiation state, and the environment, it’s often tricky to spot patterns on the epigenome-wide scale. In a recent Nature Biotechnology commentary, Aleksandar Milosavlijevic of the NIH Epigenomics Roadmap […]
How to Tame the MethylomeOctober 18, 2010So many ways to analyze genomic DNA methylation, so little time (and money). With so many choices available these days it’s not easy to figure out the best method to use for methylome studies. A new survey of two Nature Biotechnology papers by Stephan Beck from the UK’s University College London puts together the vital […]