Webinar: Lighting up the Dark Matter of the Genome – Unravelling the Roles of Non-Coding DNA in Disease and DevelopmentJune 26, 2013Dr. Marcel Dinger, PhD discusses some of the most recent findings that shed light on non-coding RNAs in the genome. **this webinar is no longer available** Abstract Approximately 98% of the human genome comprises noncoding DNA, the function of which is largely unknown. Intriguingly, more than 85% of single nucleotide polymorphisms identified to be associated […]
Keeping Up with Live Cell DNA LoopingJune 25, 2013The reality TV era has made voyeurs of us all. So it makes sense that we’d want to take a peek inside live cells too. Now comes a report of a new method that shows, for the first time, DNA getting loopy inside live E. coli cells. Johns Hopkins University Med School researchers say that […]
DeepSAGE Digs up Expression Differences in 3’ EndsJune 24, 2013It isn’t always a good thing to get the end of something, but researchers say that by grabbing onto 3’ ends of transcripts and tagging them, DeepSAGE digs deep, getting low-level transcripts and getting new info on their “back-ends.” That could be important for figuring out exactly how gene expression changes with disease. “It was […]
RIP-Seq Shows miRNA Expression and Function Not Always a MatchJune 20, 2013There is a saying that, “each microRNA can have hundreds of target mRNAs, and each mRNA can be targeted by hundreds of miRNAs”. If that’s true, then how the heck are we supposed to know what’s going on in that crazy transcriptome? What does it mean when a miRNA and predicted target don’t explain the […]
Optical Detection Adds Color to 5hmC AnalysisJune 11, 2013A talented crew of researchers led by Dr. Yuval Ebenstein (Tel-Aviv University, Israel) recently pioneered a technique that gives anyone the ability to assay 5hmc “nanodrop” style. In their paper, they presented proof-of-principle experimentation. They labeled DNA and then sandwiched it between two glass slides to stretch it.. The DNA was then imaged on a […]
Free Short Course: Epigenetic Control of Gene ExpressionJune 7, 2013If you’re new to the field or just want to brush up on an aspect of epigenetics that you don’t follow that often, Dr. Marnie Blewitt from the University of Melbourne, Australia is hooking you up with a free, six-week crash course. This course will cover the principles of epigenetic control of gene expression, how epigenetic control […]
The Consequences of RNAs Alternative Polyadenylation LifestyleJune 7, 2013First it started enjoying the ‘occasional’ methylation. Then it crossed the LINE when it ‘borrowed’ its good buddy’s machinery. And now it seems like RNA just can’t stop. It turns out that just like all those hipsters, splicing isn’t the only one to enjoy an ‘alternative’ lifestyle. Researchers from UCLA have shown that polyadenylation wants […]
Epigenetics: Getting to Know the Readers and the Writers with Dr. Jerry WorkmanMay 31, 2013Dr. Jerry Workman shares some of his thoughts on the next steps in digging into biochemistry of epigenetic mechanisms to understand what’s reading and what’s writing. Epigenetics: Getting to Know the Readers and the Writers I think the most exciting aspect about epigenetics at this time is the potential it provides for some fantastic […]
RNA-Mediated Epigenetic Heredity Gets by with a Little Help from its FriendsMay 30, 2013Just like the Beatles, evolution appears to work best in harmony with all its members. RNA-mediated inheritance, a key component of the epigenetic mix, has quickly risen into the spotlight of mechanisms for non-Mendelian heredity. Dr. Minoo Rassoulzadegan’s group (University of Nice Sophia Antipolis, France) has previously shown that small non-coding RNAs can cause heritable […]
DNA Methylation in Twins Changes Early, Like Really EarlyMay 30, 2013Like anyone else, identical and fraternal twins change a lot as they get older. Just look at Mary-Kate and Ashley Olsen (fraternal twins, believe it or not). Perhaps not-so-surprisingly, researchers are reporting that DNA methylation patterns of identical and fraternal twins change a lot in their first 18 months. The kicker is that even though […]