Gene Drives: Wormholes of BiologyJanuary 8, 2016Gene drives have been hitting the news quite a bit lately, generating a lot of hype, hope, and some hand-wringing. They are a relatively new concept, so it’s well worth a quick road trip into gene drive history, domestication, safety, and practical challenges. Gene Drives? In essence, gene drives are the wormholes of biology. They look […]
Human Pluripotent Stem Cells (hPSCs) Elevate Performance with Chimera FormationJanuary 8, 2016Ask Usain Bolt, Yelena Isinbayeva, or Lindsey Vonn and they will tell you that Gold is the only thing that matters. To them, it came in the guise of an Olympic medal (or two), but human pluripotent stem cells (hPSCs) have been in the hunt for a slightly different type of gold to prove their […]
The Early Days of CRISPR with Dr. Blake WeidenheftDecember 28, 2015Interview with Dr. Blake Weidenheft at Keystone Symposia’s Precision Genome Engineering and Synthetic Biology: Designing Genomes and Pathways The Early Days of CRISPR I was one of the earlier people involved in the CRISPR– in CRISPR biology. And so we didn’t really come at this with the intent to try to develop some new genome […]
Retroviral lincRNA Regulates miRNA Pluripotency SwitchDecember 28, 2015Everyone knows the old saying that “when life gives you lemons, make lemonade”, but what are you supposed to do when life gives you a genome full of retroviral ncRNAs? Nature seems to think it should evolve elaborate regulatory elements for your complex development. Two-thirds of the 10,000 long intergenic noncoding RNAs (lincRNA) found so […]
Going Direct: Reprogramming without iPSCs in Cell TherapiesDecember 21, 2015The generation of induced pluripotent stem cells (iPSCs) represents one of the most important scientific breakthroughs of our times, bringing us to the brink of patient-specific stem cell-based therapies. The “simple” generation process involves the forced expression of transcription factor genes in differentiated cells taken from the patient (normally skin cells) to “kick-start” the pluripotency-associated […]
Stress Accelerates Epigenetic AgeingDecember 18, 2015The epigenetic clock has developed faster than the iWatch: it can predict biological age from select CpGs, which when compared with chronological age, gives a metric known as Δ-age. The greater the difference, the greater the acceleration of epigenetic age, which indicates variation in the rate of senescence between people. To understand this variation and […]
A TAD Closer to Understanding 3D Chromatin StructureDecember 15, 2015Interview with Dr. Jennifer Phillips-Cremins at Keystone Symposia’s Precision Genome Engineering and Synthetic Biology. My lab is really focused on understanding the epigenetic mechanisms that regulate early brain development. And the, sort of traditional way of studying epigenetic marks, is to zoom in and really focus on a particular modification at a precise location in […]
Directed Evolution in Synthetic Biology with Dr. Andrew EllingtonDecember 12, 2015Interview with Dr. Andrew Ellington at Keystone Symposia’s Precision Genome Engineering and Synthetic Biology: Designing Genomes and Pathways Parts, Circuits, and Systems So in directed evolution, what you’re generally trying to do is to optimize function. And that can mean a lot of different things. But if we keep within the synthetic biology paradigm, we […]
Automating Pluripotent Stem Cell Culture – The Rise of the Robots?December 4, 2015They help cook dinner, clean the dishes, and sweep up afterward. They also build our cars, help us explore space, and now they may be on the verge of aiding in highly complex tasks in the laboratory. In particular, robot-based automation is being explored as a means to enhance efficiency in laboratories studying pluripotent stem […]
Epigenetic Diversity Teams Up with Genetics to Explain Complex PhenotypesDecember 4, 2015If epigenetics has taught us anything, it’s that genes are not our destiny. Even though aberrant patterns of epigenetic marks have been caught at the scene of the crime in many disease states, we know relatively little about their natural variation and how this influences human health. That may be about to change however with […]