Headlines Archives - EpiGenie | Epigenetics, Stem Cell, and Synthetic Biology News

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Two New Players for Better Differential Peak Detection in ChIP-Seq

November 22, 2014

Sometimes bioinformatics can seem a bit mystical, particularly when a tool arrives that makes you wonder what you were wasting your time doing before it. ChIP-seq is no stranger to this world and as a driver of a large proportion of epigenomic experimentation we’re also no stranger to the challenges of processing ChIP-seq data and peak calling. One of […]

Direct Reprogramming of Neural Stem Cells – A Step Closer to the Clinic?

November 18, 2014

“Well there goes another couple of thousand brain cells…” – a common thought after a beer, a glass of wine, or an hour or so of television, or maybe more if it’s reality TV. But can we replace these lost cells? Millions of college kids would like to, but there’s also a long list of […]

CRISPR and Stem Cells Team Up Against HIV

November 17, 2014

To this day Timothy Ray Brown, otherwise known as the Berlin Patient, is the only person cured after infection with the human immunodeficiency virus (HIV). The cure came in a fortuitous form; a stem cell transplant used to treat his leukemia came from a donor with natural resistant to HIV. Soon after, researchers discovered that […]

Coffee Gets Your Baby’s Heart Going…the Wrong Way

November 13, 2014

There’s no denying the power of coffee, it seems that without it humanity wouldn’t have the concentration or energy needed to tackle the complexities of the epigenome. But as researchers from the University of Florida show, with consumption comes responsibility and a molecule powerful enough to help you complete the 180 from bed to breakfast, may […]

A New Methylation Signature: CpG Ravines as a CpG Island Sub-Type

November 13, 2014

Islands and shores are always on the mind at this time of the year, but just because winter is coming doesn’t mean we need to put the rest of the CpGenome on the shelf. CpG Shores might be the regulatory master of CpG Islands but new features keep emerging, like CpG Canyons, and now a new sub-type of CpG Islands is coming […]

In the Epitranscriptome Clusters of Co-Methylation Define m6A’s Function

November 13, 2014

Lately, at the EpiGenie HQ, we’ve had our mind on methylation and our money on RNA. Not just limited to DNA or Cytosine, we’ve seen that N6-methyladenosine (m6A) is a highly dynamic mark in RNA that has a critical role in stem cell differentiation. Now researchers from the Northwestern Polytechnical University in China have set out to find how m6A dynamics work on […]

A Little Negativity Can Go a Long Way with Protein-Based Genome Editing

November 12, 2014

In today’s culture negativity is usually frowned upon; maintaining a positive outlook is almost essential to a successful scientific career, but an innovative team of researchers have put some negativity to good use in improving transfection of genome editing complexes using negatively charged proteins and nucleic acid transfection reagents. Conventional protein-based therapeutics usually focus on […]

Breaking Barriers: Cloning Made Easier by Erasing Epigenetic Marks

November 5, 2014

If Star Wars is anything to go by, cloning techniques of the future will be able to create a whole army of clones in the blink of an eye. Yet, back on planet Earth, the cloning of today is still relatively inefficient. A new study published in Cell identifies an important epigenetic road block in […]

Polymerases are Key Influencers in Homologous Recombination Events

November 5, 2014

Gene targeting by homologous recombination can be variable and researchers are itching to understand what key factors underlie variable success in editing experiments. Could it be an unfavorable chromatin environment, repetitive sequences, or maybe just bad luck? An unrelenting group of researchers at the University of Washington recently set out to shed some light on the genomic elements […]

in vivo CRISPR Takes Aim at Key DNA Methylation Players in the Brain

October 31, 2014

Adding to the ever growing potential of genome editing, one of the latest breakthroughs from the lab of Feng Zhang at the Broad Institute of MIT and Harvard puts CRISPR/Cas9 to the test with an interesting research trifecta of: in vivo genome editing focused on the brain genome editing that targeted DNA methylation machinery including key readers and writers. both […]