Epigenetic Editing Misses the Mark: dCas9-DNMT3A Causes Off-Target Genome-Wide DNA HypermethylationFebruary 12, 2018While we’ve been captivated by the powerful applications of precision epigenetic editing via deactivated Cas9 (dCas9), we’ve also been mesmerized by the fact that epigenetic editing doesn’t always work as expected. Building on our need to take a step back and look at the bigger picture, new findings from the lab of Alexander Meissner at […]
SunTag Casts Light on iPSC ReprogrammingFebruary 6, 2018While the DNA editing function of CRISPR/Cas9 systems may appear to hog the limelight, we believe that a new SunTag approach for CRISPR/Cas9-mediated induced pluripotent stem cell (iPSC) reprogramming via epigenome editing deserves its day in the sun! The exciting reprogramming strategy utilizes an endonuclease dead Cas9 (dCas9) fused to a repetitive protein scaffold known […]
Like a Fine Wine, Histone Variant H2A.Z Represses Memories and Accumulates with Age!February 6, 2018While aging works wonders for the taste of our ever-accumulating wine collection, the passage of the years is not as kind to our memories! To fully decipher the processes underlying learning and memory differences in the aging brain, the lab of Iva Zovkic at the University of Toronto Mississauga (Canada) recently expanded on past work […]
Epigenetic and Mitochondrial Clocks Synchronously Accelerate with Bipolar DisorderJanuary 18, 2018A wise man once said that time is relative, and while physics was on his mind, it seems that biology should have been as well. For instance, patients with bipolar disorder suffer from accelerated aging. However, examinations of telomere length have given mixed results, and this inspired the lab of Joao Quevedo in the University […]
H3K4 Mono-Methylation Means More at Most EnhancersJanuary 16, 2018People can have some pretty strange tastes. From mayonnaise on fries to syrup on spaghetti, there’s no accounting for personal preference. Proteins can have some interesting preferences too, where some regions of the genome look better than others. To get at these preferences, a recent publication from the Laboratory of Bing Ren at UC San […]
Single-Cell DNA Methylomes Reveal the Reprograming Secrets of Early Human EmbryosJanuary 16, 2018You’ve heard before that timing is everything, and this is doubly true in developmental biology. New research out of Fuchou Tang’s lab (Peking University, Beijing) singles in on the timing of methylation changes during embryonic development, and exposes the delicate epigenetic dance of global demethylation and targeted remethylation. Tang’s lab is no stranger to embryonic […]
YY1 Drives Enhancers and Promoters Loopy!January 15, 2018Cell culture hood in disarray? Favorite coffee cup missing? Internet running slow? What exactly drives you loopy in the laboratory?! Recently, the lab of Richard A. Young (Whitehead Institute for Biomedical Research, Cambridge, USA) has been driven round the bend in their quest to understand what controls the DNA looping process that brings together enhancers […]
TET Proteins: Defending Differentiation by denying de novo Methylation!December 13, 2017I don´t overeat! I’m not lazy! I’m not eating the agar plates when I´m working in the lab late, honest! Psychologists consider denial as one of our most primitive defense mechanisms and recent studies of epigenetic defense mechanisms in embryonic stem cells (ESCs) by the labs of Olivier Elemento (Weill Cornell Medical College) and Danwei […]
Hit-and-Run Epigenetic Editing Helps Breast Cells Evade Cycle ArrestDecember 11, 2017While a hit-and-run typically leads to an arrest, in the world of epigenetic editing it turns out to be the key to evading cell cycle arrest (senescence) and promoting the transformation of a law-abiding cell into a cancerous criminal! The hypermethylation of promoters at the wrong time and wrong place is a trademark of cancer, […]
One-Carbon, One Long Life: Methyl Donors Linked to LongevityNovember 22, 2017While manipulating DNA methylation has taken up most of our lifespans, the manipulation of methyl donors critical to this process may just be the key to making up for the lost time. During one-carbon metabolism, the essential amino acid methionine is metabolized into S-adenosylmethionine (SAM), a methyl donor responsible for DNA and histone methylation. Donation of […]