Visualize Histone Modifications in Single Cells? Yes You Can.January 18, 2013ChIP has been a dear friend to researchers studying histone modifications for years. But, just like most friends, it has its imperfections too, particularly when it comes to sensitivity. On its best day ChIP is about as sensitive as Mr. Trump and just like The Donald, it can be temperamental. So we were excited to […]
mRNA Alternative Polyadenylation Lifestyles Comes into FocusJanuary 17, 2013As the only epigenetics media group based out of southern California, we’ve learned to be very accepting of alternative lifestyles, which is why this method caught our eye. mRNA are a diverse bunch, with all kinds of alternative polyadenylation that can affect their cellular localization and stability. RNA Seq has enabled unprecedented glimpses into the transcriptome, but […]
Making Sense of the Grade: ChIP Validation TerminologyJanuary 17, 2013Antibody vendors have been hard at work to offer antibodies that are suitable for applications like ChIP. Usually these antibodies have been used successfully in peer-reviewed publications. In many cases they’ve been validated internally by an R&D team, and in some cases, each lot may be validated to work in ChIP applications. The tricky part […]
MeCP2 Puts 5hmC in a Bind in Active Neuronal GenesJanuary 7, 2013A good actor can play very different roles and still make you believe in the character. For example, who knew Wolverine could emote and sing, like Hugh Jackman does in Les Misérables? Just the same, it turns out that MeCP2, a protein thought to repress transcription by binding to 5mC (5-methylcytosine, actually seems to encourage […]
DANPOS Reveals Dynamic NucleosomesJanuary 2, 2013Keeping track of where some nucleosomes are on chromatin can be just as tricky as keeping track of Taylor Swift’s love life. They’re on, they’re off, they’re at a new place. Well, here comes a new bioinformatics solution to help you keep score on the nucleosome front, anyway. It’s called DANPOS, and it provides single-nucleotide […]
Watch Chromatin “Breathe” in Embryonic Stem CellsDecember 31, 2012This holiday season, we breathed in lots of good smells—the scent of pine trees, the aroma of pumpkin pie, and the unmistakable smoky smell of a roaring fire. Now, researchers say they’ve caught chromatin in the act of “breathing” in human embryonic stem cells (hESCs) before they differentiate. The team from California and Italy developed […]
Top Epigenetics & ncRNA Conference Picks for Winter 2013December 27, 2012We’re on the verge of 2013. For those of you who want to up your epigenetics research game and have some fun in the process, we’ve got conferences you should definitely check out. The year starts off a little quiet on the numbers front, but the quality more than makes up for it. January […]
Get Tissue-Specific with EMD Millipore’s CpGenome™ 5-hmC Quantitation KitDecember 26, 2012One of the few things epigenetics researchers know for sure about 5-hmC, is that it’s highly variable amongst different types of tissues and cell types. So where does your favorite sample fall on the 5-hmC quantity spectrum? Thanks to the new CpGenomeTM 5-hmC Quantitation Kit from EMD Millipore that question is easier than ever to […]
EMdeCODE Deciphers Epigenetic Code, Finds New Role for Old Histone ModificationsDecember 19, 2012With all the “LOL”s, “IMHO”s, and “YOLO”s out there, it’s like we’re all speaking in code. When we get stumped on what these things mean, we can always turn to Google. But what if you want to decipher the hypothetical “epigenetic code?” Well, one researcher has the answer—EMdeCODE, a new algorithm that does just that […]
Hypermethylation in miRNA 26a Provides New Route in Prostate Cancer ProgressionDecember 12, 2012There’s usually more than one right way to get where you want to go. Unless of course, you’re using Apple Maps, then all routes are questionable, but at least have a pretty interface. It turns out there are at least two ways to wind up with prostate cancer, and neither are that attractive—having a gene […]