epigenetics

Epigenetics and ncRNA Headlines

Get all the latest highlights from the literature and special features covering trending epigenetics, ncRNA, and gene regulation research.

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Single-Molecule Imaging of 5hmC and 5mC Grabs the Bigger Picture with Less DNA

April 6, 2016

We all know the old saying “Good things come in pairs”, and when you’re only examining one member of a dynamic duo, sometimes you can miss the key contribution of the trusty sidekick. Attesting to the above, a talented team from Stanford show off a clever new technique to simultaneously image 5mC and 5hmC on […]

Prenatal Exposure to Smoking is Associated with a Long-Term Mark on CpG Methylation

April 6, 2016

Pregnancy is a sensitive period for a developing embryo/fetus where cues from the environment are incorporated into the epigenome where they can have long-term implications. While certain prenatal exposures, like alcohol and smoking, are well known to produce a number of negative health outcomes, they remain the largest cause of preventable birth defects and are […]

eBook: DNA Demethylation in Development

March 19, 2016

This ebook provides an introduction to the key cytosine base modifications: 5-methylcytosine, 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC) that have been at the center of intense study in recent years. Inside, we’ve compiled numerous highlights that provide background on how these modifications function in DNA demethylation and also highlight the growing data that captures the role of demethylation […]

Manipulating DNA Methylation with dCas9-DNMT3A

March 19, 2016

Almost immediately after its inception as a biotechnological tool, CRIPSR/Cas9 showed that it was more than just a genome editor. Deactivated Cas9 (dCas9) is a precision RNA-guided DNA-binding domain with a growing range of effector domains that can be swapped out like LEGO. When it comes to epigenome editing with dCas9, histones have led the […]

Peeping in on Dynamic All-or-None Single-Cell Chromatin Repression

March 6, 2016

Ever dream of knowing the single-cell details of chromatin regulators in real-time only to awake trapped in the static world of heterogenous cell populations? Well, dream no longer because thanks to the efforts of the Elowitz laboratory at Caltech researchers now have the ability to see just how some of our favorite epigenetic repressors (HDAC4, KRAB, DNMT3B […]

Elevate Your Epigenetics Game with DeepBlue and epiGbs

March 2, 2016

When it comes time to tackle the big data of the epigenome, tools and databases are your best friend. However, in today’s modern world, there’s more than one way to crack the epigenome and now two new tools serve up some interesting perspectives on the use of reference sequence. Going Deep into Databases Felipe Albrecht […]

MeRIP-seq, N1-methyladenosine (m1A), and the Expanding Epitranscriptome

February 23, 2016

There’s no denying that understanding a new language can be tricky. Without a complete alphabet, the most important messages can be lost in translation. When it comes to complex languages, the epigenome is no exception. There are a number of RNA base modifications involved in post transcriptional regulation, including pseudouridine (Ψ) and 5hmC, and there’s […]

Towards Blood DNA Methylation as a Pan-Cancer Surveillance Screen

February 5, 2016

Early and less tedious cancer diagnosis can prevent future complications and improve patient outcome, however past studies have revealed that the markers of most cancers are as unique as snowflakes. An enticing solution for this heterogeneity would be to screen for any type of cancer using one detection system to ‘rule them all’. Differential DNA […]

DNA Methylation and Transcription Data from Single Stem Cells

January 28, 2016

Ever wanted to be able to do two things at the same time? Like work and have a social life? Eat pizza and still fit in your new purchases? Pat your head and rub your belly? While these highly important combinations remain almost impossible (at least for the EpiGenie staff), a stellar cast of scientists […]

RNA Hydroxymethylcytosine Targets the Messenger

January 28, 2016

A new paper adds another RNA modification to the list already published, but with exciting news for the epigenetics enthusiasts out there… the characterized modification is RNA 5-hydroxymethylcytosine (5hmrC), an important mark previously discovered on DNA. The laboratory of François Fuks at ULB in Brussels decided to look deeper into the presence of 5hmC on […]