CpG-SNPs & Allele-Specific Methylation Lead to Fuzzy MethylationMay 6, 2010Interpreting DNA methylation data is tough enough when you get binary, yes/no results, but can be downright maddening when your CpG sites are giving you mixed signals. Researchers at UCSD have found that it’s been allele-specific methylation (ASM) and CpG-SNPs causing much of that “fuzzy methylation”. The scientists tackled the thorny issue of CpGs with […]
microRNA Targeting mRNAs: More Exceptions Than RulesMay 5, 2010Up to now, all miRNAs have been assumed to work the same way when it comes to finding their mRNA targets, but a new paper shows that miRNAs behave more like rugged individualists in how they function. Researchers from the University of Kentucky broke out the RIP-Chip method (Argonaute, aka AGO, co-IP assays coupled with […]
BPA Seeps Into Placental miRNA ExpressionMay 4, 2010Since 2008, Bisphenol A (BPA) has seen more bad press than a big U.S. bank. The media blitz of studies linking BPA to a number of reproductive, immune and CNS disorders has led people to eye suspiciously everything from baby bottles to that cool REI water bottle you’ve been hiking with the last few years. […]
Tracing the Roots of Mesenchymal Stem Cells Yields DNA Methylation InsightsApril 28, 2010Most of us are at least somewhat curious about our lineage: are we descended from a king, an outlaw, or maybe just a particularly snazzy dresser? And do our distant cousins in faraway lands share certain characteristics (such as a penchant for polyester) with us? A group of researchers in Norway asked similar questions about […]
CpG Islands Tackle Chromatin Remodeling ProjectApril 28, 2010Researchers have known about CpG Islands (CGIs) for decades, but there are still more questions than answers when it comes to this heavily studied genomic real-estate. Hypermethylated CGIs seem to get a lot of attention for their apparent involvement in transcriptional silencing, but most CGIs stay unmethylated. So what’s going on in these unmethylated CGIs? […]
